#!/usr/bin/make -f
# -*- mode: makefile; coding: utf-8 -*-

export DEB_BUILD_MAINT_OPTIONS = hardening=+all

# Compile with -fPIC on all platforms (fix for #636204, #654240)
export DEB_CFLAGS_MAINT_APPEND   = -fPIC -I/usr/share/pyshared/numpy/core/include/numpy
export DEB_CPPFLAGS_MAINT_APPEND = -fPIC -I/usr/share/pyshared/numpy/core/include/numpy
export DEB_CXXFLAGS_MAINT_APPEND = -fPIC -I/usr/share/pyshared/numpy/core/include/numpy
export DEB_FFLAGS_MAINT_APPEND   = -fPIC

%:
	dh $@ --with python3

override_dh_auto_clean:
	( cd pdb2pka && \
	  if [ -e pMC_mult_wrap.cpp.saved ]; then mv pMC_mult_wrap.cpp.saved pMC_mult_wrap.cpp; fi && \
	  if [ -e pMC_mult.py.saved ]; then mv pMC_mult.py.saved pMC_mult.py; fi )
	find . -name *.pyc -delete
	find . -name *.so -delete
	find . -name *.os -delete
	rm -f *.cgi .sconsign.dblite .variables.cache pdb2pqr.py html/server.html src/aconf.py
	dh_auto_clean

override_dh_auto_configure:
	dh_auto_configure
	( cd pdb2pka && \
	  cp -a pMC_mult_wrap.cpp pMC_mult_wrap.cpp.saved && \
	  cp -a pMC_mult.py pMC_mult.py.saved && \
	  swig -c++ -python -o pMC_mult_wrap.cpp pMC_mult.i )
	scons \
		URL="http://localhost/pdb2pqr/" \
		PREFIX="/usr/share/pdb2pqr"

# Disable tests, as they need an internet connection to download files
# override_dh_auto_test:

override_dh_installman-arch:
	dh_installman -a
	xmlto -o debian/pdb2pqr/usr/share/man/man1/ man debian/pdb2pqr.1.xml
	xmlto -o debian/pdb2pqr/usr/share/man/man1/ man debian/psize.1.xml
	xmlto -o debian/pdb2pqr/usr/share/man/man1/ man debian/propka.1.xml

override_dh_install-arch:
	dh_install -a
	dos2unix debian/pdb2pqr/usr/share/pdb2pqr/propka30/propka.py
	dos2unix debian/pdb2pqr/usr/share/pdb2pqr/src/psize.py

override_dh_installexamples:
	dh_installexamples
	for bakerdoc in $$( grep -l "http://agave.wustl.edu/css/baker.css" -R debian/pdb2pqr-doc/usr/share/doc/pdb2pqr/* ); do \
	  sed "s|href=\"http://agave.wustl.edu/css/baker.css\"|href=\"baker.css\"|g" -i $$bakerdoc; done

override_dh_link-arch:
	dh_link -a
	dh_link -a usr/lib/pdb2pqr/pdb2pka/$(shell basename `find . -name "_pMC_mult*.so"`)		usr/share/pdb2pqr/pdb2pka/_pMC_mult.so
	dh_link -a usr/lib/pdb2pqr/pdb2pka/substruct/$(shell basename `find . -name "Algorithms*.so"`)	usr/share/pdb2pqr/pdb2pka/substruct/Algorithms.so

override_dh_fixperms-arch:
	dh_fixperms -a
	chmod 0644 debian/pdb2pqr/usr/share/pdb2pqr/main.py
	chmod 0644 debian/pdb2pqr/usr/share/pdb2pqr/main_cgi.py
	chmod 0644 debian/pdb2pqr/usr/share/pdb2pqr/pdb2pka/ligandclean/__init__.py
	chmod 0644 debian/pdb2pqr/usr/share/pdb2pqr/pdb2pka/pka_routines.py
	chmod 0644 debian/pdb2pqr/usr/share/pdb2pqr/pdb2pka/pKaIO_compat.py
	chmod 0644 debian/pdb2pqr/usr/share/pdb2pqr/pdb2pka/pKa_utility_functions_compat.py
	chmod 0644 debian/pdb2pqr/usr/share/pdb2pqr/src/errors.py
	chmod +x debian/pdb2pqr/usr/share/pdb2pqr/propka30/propka.py
	chmod +x debian/pdb2pqr/usr/share/pdb2pqr/src/psize.py

override_dh_installchangelogs:
	dh_installchangelogs ChangeLog.md
