########################################
# Program: stretcher
# Rundate: Tue 15 May 2018 17:01:31
# Commandline: stretcher
#    -auto
#    -stdout
#    -asequence emboss_stretcher-I20180515-170128-0371-22292969-p1m.aupfile
#    -bsequence emboss_stretcher-I20180515-170128-0371-22292969-p1m.bupfile
#    -datafile EDNAFULL
#    -gapopen 16
#    -gapextend 4
#    -aformat3 pair
#    -snucleotide1
#    -snucleotide2
# Align_format: pair
# Report_file: stdout
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: hg38_chrX_131691529_131830643_47210_48660
# 2: mm10_chrX_50555743_50635321_27140_27743
# Matrix: EDNAFULL
# Gap_penalty: 16
# Extend_penalty: 4
#
# Length: 1450
# Identity:     441/1450 (30.4%)
# Similarity:   441/1450 (30.4%)
# Gaps:         847/1450 (58.4%)
# Score: -2623
# 
#
#=======================================

hg38_chrX_131      1 GGCAGGTGCATAGCTTGAGCCTAGGAGTTCAAGTCCAGCCCTGACAATGT     50
                     |                          ||||||.|||.||..||.    |
mm10_chrX_505      1 G--------------------------TTCAAGGCCATCCGGGAT----T     20

hg38_chrX_131     51 AGAGAGACCCCGTCTCTTCAAAAAATACAAAAAATAGCCAGGCATGGTGA    100
                     |.||       ||.|..|           |.||.|...|.|  ||||.||
mm10_chrX_505     21 AAAG-------GTGTGGT-----------AGAACTCTTCTG--ATGGAGA     50

hg38_chrX_131    101 CCTACAATGGAAGCCCTAGCTACGTAGGAGGCGGAAATGGGAGGATCACC    150
                     |    |||..|||                    ||.||.|||.||     
mm10_chrX_505     51 C----AATATAAG--------------------GACATTGGAAGA-----     71

hg38_chrX_131    151 TCAGCCCAGGGAGGCTGATGTTGCAGTGAGCCATGATCATGCCTCTACAC    200
                            ||||||     |.||||      ||.||.||.|.|..||||. 
mm10_chrX_505     72 -------AGGGAG-----TCTTGC------CCTTGCTCCTTCGCCTACT-    102

hg38_chrX_131    201 TCCACCCTGGGCAACAGAGTAAGATGCTGTCTAAAATATATATATATGCA    250
                                             ||||||.|||.|              
mm10_chrX_505    103 ------------------------TGCTGTGTAAGA--------------    114

hg38_chrX_131    251 TATCTGTGTGTATATATATATATATATATGTGTGTGTGTGTGTGTGTATA    300
                        |||.||                                         
mm10_chrX_505    115 ---CTGAGT-----------------------------------------    120

hg38_chrX_131    301 TACATATGTGTGTGTATATACATATATGTGTATATATATATGTGTGTATA    350
                                                                       
mm10_chrX_505    121 --------------------------------------------------    120

hg38_chrX_131    351 TATACATATACATATTCAGCATCACCTTATATTCTTTGAATATATCTACA    400
                                         |.|.||| |.|..|||.||.|         
mm10_chrX_505    121 --------------------AACTCCT-AGACCCTTGGACT---------    140

hg38_chrX_131    401 TCAATACATACTTTTGAGTGCTTGAAATTTTTTATATTTTACTCTAGAAG    450
                             |.|.|||.||..                    |||...|||.
mm10_chrX_505    141 --------TCCATTTCAGCC--------------------ACTACTGAAC    162

hg38_chrX_131    451 AACTGTAAGAAATTATAAAGTAGAAAACTTGTGGTAGGTCAAACATAGTA    500
                     .|.|||..|.||||..   |..|.|.|||    |||.||||...|||   
mm10_chrX_505    163 CATTGTTGGGAATTGG---GCTGCAGACT----GTAAGTCATCAATA---    202

hg38_chrX_131    501 AGAAGAAATAATCACTTTTTAAAGGTCTGTGCTAGGTACTATGATCTGTT    550
                              |||..||||                   |||||.       
mm10_chrX_505    203 ---------AATTCCTTT-------------------ACTATA-------    217

hg38_chrX_131    551 CCCTATATATACATAATATGGACTTTTATAAACTAATGTTCAAATTCCCC    600
                                               ||.|.||||          |||  
mm10_chrX_505    218 --------------------------TAGAGACTA----------TCC--    229

hg38_chrX_131    601 TGTAGTATAACTTCTTGTTGTTGTTTATTTTTTTTTTTTTGTATTTTTCA    650
                           ||||.||||.                               |.|
mm10_chrX_505    230 ------ATAAATTCTG-------------------------------TGA    242

hg38_chrX_131    651 TTTTAGATATGGGGTTTCACTCTGTTGACCAGGCTGATCTCGAACCACTG    700
                     .|.||||.|         ||.||   |||.|.           ||.||||
mm10_chrX_505    243 CTCTAGAGA---------ACCCT---GACAAT-----------ACAACTG    269

hg38_chrX_131    701 GTCTCAAGCGATCCTCCCATCTTGGACTCCCAAAGTGCTAGGATTACAGG    750
                     |                                                 
mm10_chrX_505    270 G-------------------------------------------------    270

hg38_chrX_131    751 CACGAGGCACCTTGACTGGCCACCATGTACTATAGCTGTTAAAACAAGTT    800
                        ||.||||       ||.||.|.|.|                      
mm10_chrX_505    271 ---GAAGCAC-------GGACATCCTCT----------------------    288

hg38_chrX_131    801 TGTTTCACTGATAACTGGAGTACTTTTCAAATATAATTAATAATTCATGG    850
                                              ||.|.|||||||||     |||   
mm10_chrX_505    289 -------------------------TTGAGATATAATTA-----TCA---    305

hg38_chrX_131    851 AAATAATGATAGCTTTAAAAGTATTGGCACTTTTAAAAACTGAGTTTGTA    900
                         |.||   ||     ||||.||.|    ||||          ||| |
mm10_chrX_505    306 ----ACTG---GC-----AAGTGTTTG----TTTA----------TTG-A    328

hg38_chrX_131    901 AACTTCATATAACATAAAATTAACCATTAAAATGTATTAATTTCAATGGC    950
                     .|.||.|..|||.|.|||.||||.|.|            |.|.|  ||.|
mm10_chrX_505    329 TATTTTACTTAAGACAAAGTTAAACCT------------ACTCC--TGTC    364

hg38_chrX_131    951 ATTTAGGACACTCACAATGCAGTGCAAGCATTACCACTATGTAGTGGCAA   1000
                     .|.|.||     ||        ||..|||||..  ||| |.|..|||   
mm10_chrX_505    365 CTCTGGG-----CA--------TGGTAGCATGG--ACT-TATTCTGG---    395

hg38_chrX_131   1001 ATCATTTTCACTACCACAAAAGAAAATCCTGGACCCATTAGTTAGTCATT   1050
                             .|||||||.|.  |||||..|.|.|.||      ||      
mm10_chrX_505    396 --------AACTACCAGAG--GAAAAGACAGAAGCC------TA------    423

hg38_chrX_131   1051 CCCCATTCCACTCTCTGCCCAGCCCCTGGCAAACACTCATCTGATTTCCC   1100
                                   |||...||.|||.|||       ||||         
mm10_chrX_505    424 --------------CTGGAAAGGCCCAGGC-------CATC---------    443

hg38_chrX_131   1101 TCACTACTGATCATCACAACAAGTGGCCTTGTTCATCTTGTTGTGGGAAC   1150
                           |||                        |.||||||.||      
mm10_chrX_505    444 ------CTG------------------------CCTCTTGTAGT------    457

hg38_chrX_131   1151 CAGGAGACCAGAGAGACCAATGGGTGGAACAGGAGGATTTTACTAGGTGG   1200
                                                            |.||||||   
mm10_chrX_505    458 ---------------------------------------TCACTAGG---    465

hg38_chrX_131   1201 TCACCGACTCAGCAGATTAACATCCAAAGGCTGAGCCCCAAACCAAGAGA   1250
                               |.|||             ||||.|||           |.|
mm10_chrX_505    466 ----------ACCAG-------------GGCTCAGC-----------ATA    481

hg38_chrX_131   1251 GGGCTTGACTTTTATACATATATCTGAAAAGGGCCCAAAACCTGTAAGGC   1300
                     |..||||.|||.|      |.|||||..|      |.|.|.||.||.  |
mm10_chrX_505    482 GTCCTTGGCTTCT------AAATCTGCTA------CCATATCTTTAT--C    517

hg38_chrX_131   1301 CGGTAAGCAAGCTTACAGCAGAACAAAGGCAGTTTATCAAACAGTGACAG   1350
                     ..|||   ||.||.|||..|.|..|||  ||   |||||||         
mm10_chrX_505    518 ATGTA---AAACTGACACAAAATTAAA--CA---TATCAAA---------    550

hg38_chrX_131   1351 GTTTTACAGTTCAGGCATGTCTTGTGACCTTTGCCATAACTGCACAGCTG   1400
                            |.||.|.|.|.        |||.|     |||.|    |.|||
mm10_chrX_505    551 -------ATTTTATGAAA--------ACCAT-----TAAGT----ATCTG    576

hg38_chrX_131   1401 GAAAACAGGAACTTACAAAATCCTTACAAGCTTGCAGAAACAGTTACAAA   1450
                     |||||.|       |.||||||                ||||||||.|||
mm10_chrX_505    577 GAAAAGA-------AAAAAATC----------------AACAGTTATAAA    603


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