# Generated by roxygen2: do not edit by hand

export("arguments<-")
export("baseCommand<-")
export("cwlClass<-")
export("cwlVersion<-")
export("extensions<-")
export("hints<-")
export("meta<-")
export("requirements<-")
export("stdOut<-")
export("steps<-")
export(CondaTool)
export(Dirent)
export(InputArrayParam)
export(InputParam)
export(InputParamList)
export(OutputArrayParam)
export(OutputParam)
export(OutputParamList)
export(ShellScript)
export(addMeta)
export(arguments)
export(baseCommand)
export(condaPackage)
export(cwlClass)
export(cwlProcess)
export(cwlShiny)
export(cwlStep)
export(cwlStepList)
export(cwlVersion)
export(cwlWorkflow)
export(env_Rcwl)
export(extensions)
export(hints)
export(inputs)
export(install_cwltool)
export(install_udocker)
export(meta)
export(outputs)
export(plotCWL)
export(readCWL)
export(requireDocker)
export(requireEnvVar)
export(requireInitialWorkDir)
export(requireJS)
export(requireManifest)
export(requireMultipleInput)
export(requireNetwork)
export(requireResource)
export(requireRscript)
export(requireScatter)
export(requireShellCommand)
export(requireShellScript)
export(requireSoftware)
export(requireStepInputExpression)
export(requireSubworkflow)
export(requirements)
export(runCWL)
export(runCWLBP)
export(runCWLBatch)
export(runs)
export(short)
export(stdOut)
export(stepInParam)
export(stepInParamList)
export(stepInputs)
export(stepOutputs)
export(steps)
export(writeCWL)
exportClasses(InputArrayParam)
exportClasses(InputParam)
exportClasses(InputParamList)
exportClasses(OutputArrayParam)
exportClasses(OutputParam)
exportClasses(OutputParamList)
exportClasses(cwlProcess)
exportClasses(cwlStep)
exportClasses(cwlStepList)
exportClasses(cwlWorkflow)
exportClasses(stepInParam)
exportClasses(stepInParamList)
exportMethods("$")
exportMethods("$<-")
exportMethods("+")
import(BiocParallel)
import(batchtools)
import(methods)
import(shiny)
import(utils)
import(yaml)
importFrom(DiagrammeR,add_edges_from_table)
importFrom(DiagrammeR,add_nodes_from_table)
importFrom(DiagrammeR,create_graph)
importFrom(DiagrammeR,mermaid)
importFrom(DiagrammeR,render_graph)
importFrom(R.utils,commandArgs)
importFrom(R.utils,createLink)
importFrom(S4Vectors,SimpleList)
importFrom(S4Vectors,wmsg)
importFrom(basilisk,BasiliskEnvironment)
importFrom(basilisk,basiliskStart)
importFrom(basilisk,basiliskStop)
importFrom(codetools,findGlobals)
importFrom(stats,na.omit)
importFrom(utils,.DollarNames)
