Function
bandedChainAlignment
 Calculates a banded alignment around a chain of seeds.
Include Headers
seqan/seeds.h
Parameters
|  A chain of seeds. | |
|  Half of the width of the band. | |
|  The alignment where the result is stored. Types:  Align | |
|   The score matrix. Types:  Simple Score Remarks:  Depending on the score matrix the Needleman-Wunsch or the Gotoh algorithm is used. For a description of the algorithm see the masters thesis of C. Kemena, Section 5.3.3 LAGAN Alignment. | 
Return Values
  The score of the alignment.
SeqAn - Sequence Analysis Library - www.seqan.de