Function
bandedAlignment
Calculates a banded alignment around a Seed.
Include Headers
seqan/seeds.h
Parameters
|  An alignment dataStructure containing two sequences (sections). The sequence (parts) must be equal to the part which is covered by the seed. Types:  Align | |
|   The seed for wich the banded alignmnent shall be constructed. Types:  Seed | |
|   A value describing the additional extension of the diagonal band. | |
|   The score matrix used. Types:  Simple Score | 
Remarks
 Use the function globalAlignment with the tag BandedNeedlemanWunsch  or BandedGotoh  for more general banded alignment without a seed.
Return Values
 The score of the optimal banded alignment given in align.
SeqAn - Sequence Analysis Library - www.seqan.de