Class Specialization
NonScored SeedSet
SeedSet that uses seeds without scores.
|  |  | ||||||
| NonScored SeedSet | |||||||
Include Headers
seqan/seeds.h
Parameters
|   Type that saves the positions and upper/lower bounds. Remarks:  Positive and negative values are needed. | |
|  The Seed specialization. | |
|  The scoring sheme to use. | |
|   The quality factor to use. | |
|   The kind of GapCosts to use. | 
Specialization of
Metafunctions
| Type of iterator objects that are used to traverse the container. (SeedSet) | |
| The spec of a class. (SeedSet) | |
| Type of the items in the container. (SeedSet) | |
| Type of the items in the container. (SeedSet) | 
Functions
| Adds a seed to an existing set. (SeedSet) | |
| Adds several seeds to an existing set. If a merging or chaining algorithm is used seeds are added if the merging or chaining fails. (SeedSet) | |
| The begin of a container. (SeedSet) | |
| The begin of a container. (SeedSet) | |
| The end of a container. (SeedSet) | |
| The end of a container. (SeedSet) | |
| Sets the maximal distance between two seed during a chaining process. (SeedSet) | |
| Sets the minimum length for a seed to be saved permanently. (SeedSet) | |
| Sets the maximal distance between two seed during a chaining process. (SeedSet) | |
| Sets the minimum length for a seed to be saved permanently. (SeedSet) | 
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