Class
AlignedReadStoreElement
Represents an alignment between read and contig.
Parameters
|  Type to store gap-space positions. | |
|  Type of a read gap anchor. Types:  GapAnchor | |
|  The specialization type. Default:  | 
Remarks
 Value type of the alignedReadStore string.
Typedefs
| Type of the | |
| Type of the | |
| The specialization type. | 
Data Members
| Begin position of the alignment in gap-space. | |
| Refers to the contig in the contigStore the read is aligned with. | |
| End position of the alignment in gap-space. | |
| String of read gap anchors. Can be used to create a | |
| The alignment id refers to associated alignment information in alignQualityStore or alignedReadTagStore. | |
| Constant to represent an invalid id. | |
| Two read alignments having the same | |
| Refers to the aligned read in the readStore. | 
Member Functions
| Constructor | 
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