Function
printAlignment
Prints a window of the visible layout of reads into a outstream.
Include Headers
seqan/store.h
Parameters
|  A C++ outstream, e.g. std::cout. | |
|  A layout structure created by a previous call of layoutAlignment. Types:  AlignedReadLayout | |
|  Output format. Types:  Raw Remarks:  This tag is used for subsequent calls of write for contig and read gaps data structures. | |
|  The fragment store. Types:  FragmentStore | |
|  The  | |
|  Window begin position in gap-space. | |
|  Window end position in gap-space. | |
|  Begin line of the window. | |
|  End line of the window. | 
Remarks
 The window coordinates (beginPos , ...) may be chosen bigger than the layout.
The empty space is then filled with whitespaces.
See Also
SeqAn - Sequence Analysis Library - www.seqan.de